Changelog¶

1.2.0¶

Added

More functionality to import fMRIprep-processed data (#315)
Function to rotate flatmaps (f88a)
Option to ignore NaNs when averaging across the thickness of cortex (#355)
New views for cortex.export.plot_panels and passing of additional kwargs (#361, #362)
Specify colorbar location with default positionings for quickflat (#364)
Pass custom colors for VolumeRGB (#366)

Fixed

Bug with automatic creation of SVGs with ROIs (#340)
Python 2/3 compatibilities for svgoverlay (#352)
from_freesurfer/to_freesurfer handling of NIFTI images (#354)
ROI label display parameters (#356)
Improve documentation for install and demo (#359)
Inkscape compatibility with newer versions (#365)
Use correct contrast for automatic alignment with FreeSurfer’s bbregister (39d8)

Fixed

Added

Added function cortex.utils.download_subject to download new subjects for pycortex from web URLs. This function allows users to download FreeSurfer’s fsaverage surface, with a flatmap and ROI labels made by Mark Lescroart (#344)
Vertex objects have a new method .map() that allows mapping from one surface to another (#334)
Add cortex.freesurfer.get_mri_surf2surf_matrix to create a sparse matrix implementing the mri_surf2surf command (#334)
Add function to plot and save 3D views and plot panels (#337)
Axis object can be passed to quickshow (#325)
Help menu for the 3D WebGL viewer can be accessed with a shortcut (#319, #321)
New keyboard shortcuts (list)
Convenience function to import data preprocessed with fmriprep (#301)
Added option to use FreeSurfer’s BBR for automatic alignment and function to use Freeview for manual alignment

Fixed