cortex.mni.transform_mni_to_subject

cortex.mni.transform_mni_to_subject(subject, xfm, volarray, func_to_mni, template='/usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz')

Transform data in volarray from MNI space to functional space specified by xfm.

Parameters

subjectstr

Subject identifier

xfmstr

Name of functional space that data will be transformed into.

volarraynumpy.ndarray

3D volume in MNI space (should have same size as template)

func_to_mninumpy.ndarray

Transformation matrix from xfm space to MNI space. Get this from compute_mni_transform.

templatestr, optional

Path to MNI template volume, used as reference. Defaults to FSL’s MNI152_T1_1mm_brain.

Returns

nibabel.nifti1.Nifti1Image

volarray after transformation from MNI space to space specified by xfm.